package
0.0.0-20220611144015-40008dcd7b35
Repository: https://github.com/knightjdr/cmgo.git
Documentation: pkg.go.dev
# README
Module name: network-svg
Create an svg network for NMF or SAFE
| parameters | definition | default |
|---|---|---|
| colorList | text file with hex colors | |
| localizations | node localizations | |
| nodeCoordinates | text file with list of nodes and x, y coordinates | |
| outFile | output file name | network.svg |
Example file formats
colorList
#C0B9B2
#1CE6FF
#FF4A46
#008941
localizations
NMF
gene rank score
AAAS 13 0.3326865
AAK1 5 0.1396383
AAR2 19 0.034698
AARS2 6 0.2251458
AASDH 2 0.09391108
AASS 4 0.3192908
SAFE
##
## This file lists the properties of all nodes in the network.
##
Node label Node label ORF Domain (predominant) Neighborhood score [max=1, min=0] (predominant) Total number of enriched domains Number of enriched attributes per domain
VAMP3 VAMP3 20 0.600 1 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5,0,0,0,0
SNAP29 SNAP29 1 0.263 0 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
CDCA3 CDCA3 20 1.000 1 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,61,0,0,0,0
ZC3HAV1 ZC3HAV1 19 1.000 1 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17,0,0,0,0,0
nodeCoordinates
gene x y
AAAS 68.5533816047702 -33.9816908466039
AAK1 -28.8672128420763 -43.6402491976645
AAR2 2.2808526181511 -6.97152015675554
AARS2 89.5765051986436 67.0643311315994
AASDH 8.41236940140679 35.7167588576447
AASS -70.8218291970252 64.4050187741019
AATF -15.8239071660148 51.4522241800074
ABCA3 -19.8932838810909 -3.05943018550193
ABCB1 -16.1846453937935 91.5103672699896
ABCB10 -52.4758726133164 73.6495265978388