package
0.0.0-20220611144015-40008dcd7b35
Repository: https://github.com/knightjdr/cmgo.git
Documentation: pkg.go.dev
# README
Module name: bait-gradient
Takes an ordered bait list and expected localizations for the baits and outputs a gradient showing adjacent bait similarity: black if the two adjacent baits share an expected localization, grey if only one does and white otherwise.
| parameters | definition | default |
|---|---|---|
| baitList | list of baits in order of similarity | |
| expectedLocalizations | .txt file with bait name and expected localizations | |
| outFile | output file name | bait-gradient.svg |
Example file formats
baitList
HNRNPA1
RPS20
SERBP1
FBL
RPS6
RPL31
expectedLocalizations
id bait localization
1 AARS2 mitochondrial matrix
2 ACBD5 peroxisome
3 ACTB actin cytoskeleton
12 ANAPC2 "cytoplasm;nucleoplasm;nucleus"
13 ANK3 "cell junction;plasma membrane"
Output
- svg gradient in same order as input bait list
# Functions
Draw takes an ordered bait list and expected localizations for the baits and creates a gradient showing similarity between adjacent baits.