package
0.0.0-20220611144015-40008dcd7b35
Repository: https://github.com/knightjdr/cmgo.git
Documentation: pkg.go.dev
# README
Module name: analysis-dbgenes
Generates a txt file of official genes used for SAINT
| parameters | definition | default |
|---|---|---|
| uniprotdb | Uniprot Swiss-Prot database | |
| outFile | output list of gene names | db-genes.txt |
Example file formats
Download Uniprot file from: ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2018_03/knowledgebase/uniprot_sprot-only2018_03.tar.gz
Unzip folder and use .dat file.
Output
- txt files with one gene names per line