New returns a new Config struct populated by settings from config.yaml, in the repo, or some other settings file the user points to with the "--config" command TODO: check for and error out on nonsense config values TODO: add back the config file path setting.

Setup checks that the REPP data directory exists.

DefaultConfig is the initiate client config that's embedded with repp and installed on the first rungo:embed config.yaml.

DefaultEnzymes is the JSON file of default enzymes embedded with reppgo:embed enzymes.json.

DefaultFeatures is the JSON file of default features embedded with reppgo:embed features.json.

DefaultPrimer3Config is the FS of Primer3, needed to run primer3_core, etcgo:embed primer3_config primer3_config/interpretations.

EnzymeDB is the path to the enzymes file.

FeatureDB is the path to the features file.

Primer3Config is the path to a primer3 config directory primer3 is (overly) particular about the trailing slash.

SeqDatabaseDir is the path to a directory of sequence databases.

SeqDatabaseManifest is the path to the manifest file for the sequence databases.

Config is the Root-level settings struct and is a mix of settings available in config.yaml and those available from the command line.

SynthCost contains data of the cost of synthesizing DNA up to a certain size.